Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTVMVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLQKGL
4PPD Chain:A ((9-98))
-QEALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGI
General information:
TITO was launched using:
RESULT:
Template:
4PPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41327 for 686 contacts (-60.2/contact) +
2D Compatibility (PS) -9861 + (NN) -2985 + (LL) 208
1D Compatibility (HY) -10800 + (ID) 3650
Total energy: -68415.0 ( -99.73 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4PPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPD-query.scw
PDB file :
Tito_Scwrl_4PPD.pdb
: