Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCDDVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLAVAVDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYALDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY
3GFH Chain:A ((5-215))
---DLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATYGIDAALKSADVQLATYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNP---
General information:
TITO was launched using:
RESULT:
Template:
3GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137499 for 1804 contacts (-76.2/contact) +
2D Compatibility (PS) -22954 + (NN) -11435 + (LL) 580
1D Compatibility (HY) -18000 + (ID) 5500
Total energy: -194808.0 ( -107.99 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFH-query.scw
PDB file :
Tito_Scwrl_3GFH.pdb
: