Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYTITTLGAEPEIQA-ELEQIQQQLFDAGGDLAT--EEGKRAYKLTSE-PVAWLEDRIDIYADEPPEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFAVARVVNYRAGETDIFYKNSELVFRNKKK
3CI4 Chain:A ((7-193))
VKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKDVF-----
General information:
TITO was launched using:
RESULT:
Template:
3CI4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58947 for 1386 contacts (-42.5/contact) +
2D Compatibility (PS) -19653 + (NN) -8896 + (LL) 212
1D Compatibility (HY) -16800 + (ID) 4850
Total energy: -108934.0 ( -78.60 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3CI4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CI4-query.scw
PDB file :
Tito_Scwrl_3CI4.pdb
: