Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTK-KVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDL-NCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
1EUG Chain:A ((7-220))
-------WHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
1EUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114487 for 1714 contacts (-66.8/contact) +
2D Compatibility (PS) -22730 + (NN) -9691 + (LL) 684
1D Compatibility (HY) -20400 + (ID) 6050
Total energy: -172674.0 ( -100.74 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1EUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EUG-query.scw
PDB file :
Tito_Scwrl_1EUG.pdb
: