Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
2DL1 Chain:A ((18-54))
------AYKKAFLFVNKGLNTDELG--QKEEAKNYYKQGIGHLLR------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1929 for 219 contacts (8.8/contact) +
2D Compatibility (PS) -4365 + (NN) -3026 + (LL) 2796
1D Compatibility (HY) -400 + (ID) 350
Total energy: -3416.0 ( -15.60 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2DL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DL1-query.scw
PDB file :
Tito_Scwrl_2DL1.pdb
: