Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIP-TATLMH---HVLKKENGLRTDQLLSQIAIFDIPTYHKPLL-ITDCAMNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKMPSTLEAQ---EVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAK-VGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK |
1VMI Chain:A ((123-320)) | ------------------------------------------------------------------------------VSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKT---LSSI-FLMLPQYSGPALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDLSRGCS----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68760 for 1507 contacts (-45.6/contact) +
2D Compatibility (PS) -20394 + (NN) -8165 + (LL) 8812
1D Compatibility (HY) -7200 + (ID) 2650
Total energy: -98357.0 ( -65.27 by residue)
QMean score : 0.460
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