Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCI---IELLKTI
4WKB Chain:A ((1-231))
MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNT---HAVRGLICTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELLK--
General information:
TITO was launched using:
RESULT:
Template:
4WKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158792 for 2015 contacts (-78.8/contact) +
2D Compatibility (PS) -24762 + (NN) -12234 + (LL) 252
1D Compatibility (HY) -24800 + (ID) 5700
Total energy: -226036.0 ( -112.18 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_4WKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WKB-query.scw
PDB file :
Tito_Scwrl_4WKB.pdb
: