Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNENLITITGLTKKYRKRK--PLNDINLSLQKGKIIGLLGPNGAGKTTLLNAISGLLKPTSGTIN-----LAENSKIAYLPSEDFLPNMVICDYFRIYHSF-------FPDFDQEKAKQMIRSFGINIKENTKY-------------LSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDD---LIKSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYRKSVMDYYREVFGHA
1OXV Chain:A ((4-228))
-----IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL-IVPPEDRKIGMVFQTW-ALYPNLTAFENIAFPLTNMKMSKEEIRK---RVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123165 for 1448 contacts (-85.1/contact) +
2D Compatibility (PS) -20630 + (NN) -5327 + (LL) 2524
1D Compatibility (HY) -14800 + (ID) 3450
Total energy: -164848.0 ( -113.85 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1OXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXV-query.scw
PDB file :
Tito_Scwrl_1OXV.pdb
: