Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGEKEFRRLEHEKLK-ELATTKAVIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRLKGDTTRPLVQQK-TAEEIRAIFEPRIAHYQDSADFIVNTDNRNQQEVAQTILTMLDK
1U8A Chain:A ((12-166))
-GSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAG-HTVVYLEISAAEGVRRTGG--VRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL--
General information:
TITO was launched using:
RESULT:
Template:
1U8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48504 for 1106 contacts (-43.9/contact) +
2D Compatibility (PS) -16653 + (NN) -7251 + (LL) 224
1D Compatibility (HY) -7200 + (ID) 2850
Total energy: -82234.0 ( -74.35 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1U8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8A-query.scw
PDB file :
Tito_Scwrl_1U8A.pdb
: