Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPDLMFQYAEQARERGLKIIIAGAGGAAHLPGMVAAKTTLPVIGVPIKSKALNGMDSLLSIVQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDYLG
3OPQ Chain:A ((5-159))
----VGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPD---
General information:
TITO was launched using:
RESULT:
Template:
3OPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119639 for 1287 contacts (-93.0/contact) +
2D Compatibility (PS) -16871 + (NN) -6097 + (LL) 500
1D Compatibility (HY) -16800 + (ID) 5400
Total energy: -164307.0 ( -127.67 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_3OPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OPQ-query.scw
PDB file :
Tito_Scwrl_3OPQ.pdb
: