Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLLKNYPLTDKQKTWLKEWSDSK
4YVG Chain:A ((21-259))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGA-KVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKE-----
General information:
TITO was launched using:
RESULT:
Template:
4YVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146048 for 1692 contacts (-86.3/contact) +
2D Compatibility (PS) -25091 + (NN) -7605 + (LL) 44
1D Compatibility (HY) -24000 + (ID) 5300
Total energy: -208000.0 ( -122.93 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4YVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVG-query.scw
PDB file :
Tito_Scwrl_4YVG.pdb
: