Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTFQLVATAASGLEAIVGKEVA----RLGYDPKVENGKVYFEG-------------------DLSAIARANLWLRVADRVKIVVGV--FKATTFDELFEKTK-------ALPWEDYLPLDAQFPVAGKSVKSTLYSVP--DCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSG-AGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF-QTEDEYGVVVANPPYGERLEDEEAVRQLYRE-MGIVYKRMPTWSVYVLTSYELFEEVY---GKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
3TM4 Chain:A ((1-362)) | ---MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAV--RSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAE--LIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELAL----------RRYSGEII----------------GIEKYRKHL--IG----------AEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG------SMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLY-------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142547 for 2510 contacts (-56.8/contact) +
2D Compatibility (PS) -34315 + (NN) -14070 + (LL) 3840
1D Compatibility (HY) -21200 + (ID) 5100
Total energy: -213392.0 ( -85.02 by residue)
QMean score : 0.411
|
|
|