Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVA----RLGYDPKVENGKVYFEG-------------------DLSAIARANLWLRVADRVKIVVGV--FKATTFDELFEKTK-------ALPWEDYLPLDAQFPVAGKSVKSTLYSVP--DCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSG-AGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF-QTEDEYGVVVANPPYGERLEDEEAVRQLYRE-MGIVYKRMPTWSVYVLTSYELFEEVY---GKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3TM4 Chain:A ((1-362)) | ---MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAV--RSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAE--LIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELAL----------RRYSGEII----------------GIEKYRKHL--IG----------AEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG------SMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLY-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142547 for 2510 contacts (-56.8/contact) +
2D Compatibility (PS) -34315 + (NN) -14070 + (LL) 3840
1D Compatibility (HY) -21200 + (ID) 5100
Total energy: -213392.0 ( -85.02 by residue)
QMean score : 0.411
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