Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKITINQASEFVGKEVTIGAWLANKRSSGK-IAFLQLRDGTGFMQGVVVKAEVGDDIFATAKALT--QETSLYVTGTINE--DTRSPFGYEMAVSSVEVISESHDYPI---TPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGSAPEGTTELFHTKYFEEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFYKLEDSLQVQENYVAFLVKAVL--DNCRLELDRLGRDVSHLEKMVAPFPRITYTEAIERLHELGFDD-----IVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDPENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGSVPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP |
| 2XGT Chain:A ((1-435)) | --VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLM-----DKLCQTYDALTVNTECTVEIYGAIKEVP-----NGHELIADFWKIIGNAPPGGIDNVLN--ASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPER---PFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMP-GVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XGT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204613 for 3228 contacts (-63.4/contact) +
2D Compatibility (PS) -43711 + (NN) -10491 + (LL) 1312
1D Compatibility (HY) -36000 + (ID) 7100
Total energy: -300603.0 ( -93.12 by residue)
QMean score : 0.446
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