Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKYCLVEKDTCIACGACSIHAPDVFDYDTEGLA---FNILDNNTGTKEIPEDLVEMVIDAEFACPSLSIKVSDSSFH
4DHV Chain:B ((6-66))
-----VDQDTCIGCAICA-LCPDVFEMNDEGKAQPKVEVIED--------EELYNCAKEAMEACPVSAITIEEA---
General information:
TITO was launched using:
RESULT:
Template:
4DHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43064 for 346 contacts (-124.5/contact) +
2D Compatibility (PS) -6120 + (NN) -2593 + (LL) 1000
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -56627.0 ( -163.66 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_4DHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DHV-query.scw
PDB file :
Tito_Scwrl_4DHV.pdb
: