Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVKLSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDDELVERDIRAVVDVAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTGGATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPAKPDNY
1UB3 Chain:A ((2-212))
-DLAAHIDHTLLKPTATLEEVAKAAEEALEYGFYGLCIPPSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVRE-AVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA----------
General information:
TITO was launched using:
RESULT:
Template:
1UB3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102683 for 1927 contacts (-53.3/contact) +
2D Compatibility (PS) -23897 + (NN) -13558 + (LL) 260
1D Compatibility (HY) -15600 + (ID) 4600
Total energy: -160078.0 ( -83.07 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_1UB3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB3-query.scw
PDB file :
Tito_Scwrl_1UB3.pdb
: