Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDHAATT----KMSEAALEVFMSASREFFANSESLHDAGTKSAALLEKCRGSFAEILHVPSRGIMFTSGGTESNQIAIQTL--LHSTKKKEVLVSPLEHASVWQQLEALEEAGACWLRLLPVDAFGRVDPAVLSDMISPDTGLVIIQHVNSEIGSIQPIRELAHIAKQAGVYFHTDIVQSFGKL--DLTLDDVTSFSISSHKIYGPKGAGLLFI--KPDVPMQVPLPNVHHEFGFRPGTVNVPAIAAFTTAAYDIMGNREKEARRIAELKKAICEALT--AKVKVEGGL-NTSPFILGITLPNMQGQEALLALNEADIQISTTSACSLRDPAPSRTLLATGKTIEEASRFIRLSFGR---ENELSDSL-IFKKELDKLLRKR |
| 3LVJ Chain:A ((24-399)) | -IYLDYSATTPVDPRVAEKMMQ-FMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP-QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALK--DLAVSSG------SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186193 for 3081 contacts (-60.4/contact) +
2D Compatibility (PS) -39588 + (NN) -24228 + (LL) 1700
1D Compatibility (HY) -23600 + (ID) 5850
Total energy: -277759.0 ( -90.15 by residue)
QMean score : 0.529
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