Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFITAMLISFLVFSFISGEVSAATWLLFIALALFGALGFLDDYIKVVQKRNLGLTSKQKFLGQVVISILFYLVYHFNDFAETLNIPFTNIEVDLGWFFVIFILFWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFKATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF |
2LS4 Chain:A ((5-23)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LCIAVAAGAGTGYFLFSWK----------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4597 for 75 contacts (-61.3/contact) +
2D Compatibility (PS) -1712 + (NN) 1237 + (LL) 27052
1D Compatibility (HY) -800 + (ID) 200
Total energy: 20980.0 ( 279.73 by residue)
QMean score : -0.346
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