Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSLEEALLFREATVTDLKSIMNVENAAFTVPWTEAAFRNEFIINQYAYYLLAIYKEQVVGY------------AGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAK-ERGVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL
4LX9 Chain:A ((53-163))
------------------------------------------------FFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKKVKVLKGYYADG-EDAYLM----
General information:
TITO was launched using:
RESULT:
Template:
4LX9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52932 for 574 contacts (-92.2/contact) +
2D Compatibility (PS) -10632 + (NN) -4954 + (LL) 5304
1D Compatibility (HY) -10400 + (ID) 1750
Total energy: -75364.0 ( -131.30 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4LX9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LX9-query.scw
PDB file :
Tito_Scwrl_4LX9.pdb
: