Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYI---ANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
3AIK Chain:A ((61-297)) | ---------------------------------------------------------------------------------EVGKIEDITIPGSETNIKARVYYPKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNSEKFNGKYG-IAVGGDSAGGNLAA-VTAILSKKENIKLKYQVLIYPAVSF-----DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA-----DLNDLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVRFNNVIHGFVS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129539 for 2091 contacts (-62.0/contact) +
2D Compatibility (PS) -25462 + (NN) -14247 + (LL) 8356
1D Compatibility (HY) -21200 + (ID) 5350
Total energy: -187442.0 ( -89.64 by residue)
QMean score : 0.591
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