Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRV-KVASDMHGKSFQIAGEEDL--LMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEFVMPVVGLCIGVPDVEAPVK-PRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
3EOF Chain:A ((6-184))
-------VKNRRTIRKYQQK-DITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERNA----VPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPELVFPITTVTVGYP-AESPKQVDRLPIEGIIHEESYH-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3EOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140838 for 1290 contacts (-109.2/contact) +
2D Compatibility (PS) -18878 + (NN) -8137 + (LL) 4516
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -176937.0 ( -137.16 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3EOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EOF-query.scw
PDB file :
Tito_Scwrl_3EOF.pdb
: