Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIPFIIQYVKSTLGPTAIFEGRKVLKFWQMVIVFIFLNALLLLPVSAHFANQSSFDLPSLMPKMATLGTDQLASKISGLTLENGALTDKNAHI-VEKTVNGVAGVNLTKAELSGA---KNVINFKDQEMTLTDASGYNFEVSYPKDATLSEITSGESLVDWVSAQWYLENQAFVFLSMVLMIGSIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKESVNLTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAASR |
5A1V Chain:G ((762-874)) | ----------------------------------------------------NQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIV-YDVSGAASDRNCVVLSDIHIDIMD---------YIQPAT---CTDAEFRQMWAEFEW--ENKVTVNTNM----------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6270 for 579 contacts (10.8/contact) +
2D Compatibility (PS) -11064 + (NN) 6714 + (LL) 16696
1D Compatibility (HY) -5200 + (ID) 350
Total energy: 13066.0 ( 22.57 by residue)
QMean score : 0.056
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