Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYLAEK
3OAF Chain:A ((21-90))
----------------------------------------DLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRPLKGRINLVLS-RELKEPPQGAHFLS--
General information:
TITO was launched using:
RESULT:
Template:
3OAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12978 for 386 contacts (33.6/contact) +
2D Compatibility (PS) -7238 + (NN) -701 + (LL) 4716
1D Compatibility (HY) -2000 + (ID) 800
Total energy: 6955.0 ( 18.02 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_3OAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OAF-query.scw
PDB file :
Tito_Scwrl_3OAF.pdb
: