Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYQLVIVGYGGMGS-YHVTLASAADNLEVHGVFDILEEKREAAAEKGLKIYESFEAVLADEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSEDLLAIMDVAKKVNKHFMVHQNRRWDEDFLIIKEIFEQKTIGEMFHLE-SRVHGANGIPGDWRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSAN-LSFALGDEVDDGFVTFITFENG-ITAQIEVGTTNFIKLPRWYVKGTEGTGIIHDWDLSGEIVQPTALAKTSEPTPIKAGQGLTK-----TMAPPSEEATNTLSLPAPAKLAPSFYNNFIDVLNNTSEPIVQNEEVYQVLKLIEAIFEAAETNRTIHSI |
| 3GDO Chain:A ((18-354)) | -------ILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHE-LEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEV----------ATGTLYDLGSHIIDQTLHLF-GMPKAVTANVMAQRENAETVDYF--HLTLDYGKLQAILYGGSIVPANGPRYQIHGKDSSFIKYGID-----GQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTET--IPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSKEKRTI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181732 for 2551 contacts (-71.2/contact) +
2D Compatibility (PS) -34596 + (NN) -15785 + (LL) 2048
1D Compatibility (HY) -10800 + (ID) 4450
Total energy: -245315.0 ( -96.16 by residue)
QMean score : 0.478
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