Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
1NG5 Chain:A ((26-212))
---------------------------------------------------------AHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKII--
General information:
TITO was launched using:
RESULT:
Template:
1NG5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61379 for 1436 contacts (-42.7/contact) +
2D Compatibility (PS) -19913 + (NN) -6307 + (LL) 4392
1D Compatibility (HY) -19600 + (ID) 3600
Total energy: -106407.0 ( -74.10 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1NG5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NG5-query.scw
PDB file :
Tito_Scwrl_1NG5.pdb
: