Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEERLYELEDKVQDLELEVHDLRDRIQLLEDKPDVRSSLLGHNVWVLIPLVAIISWMVVEIFS
1KD8 Chain:B ((1-28))
---KVKQLKAKVEELKSKLWHLKNKVARLKK--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2125 for 102 contacts (20.8/contact) +
2D Compatibility (PS) -3205 + (NN) -3230 + (LL) 3476
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -3134.0 ( -30.73 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1KD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KD8-query.scw
PDB file :
Tito_Scwrl_1KD8.pdb
: