Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIKQAIIKLETILENGNAIESGSFVKYSVIKNILS----LLEK-DQELKIIEMKVELNGVEDSIENATLLEKRLIEAKSLVEDLASTINSLEIKVK
2IUB Chain:A ((180-261))
-------------------------YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSL-----
General information:
TITO was launched using:
RESULT:
Template:
2IUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3838 for 279 contacts (-13.8/contact) +
2D Compatibility (PS) -6957 + (NN) -5226 + (LL) 2388
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -20883.0 ( -74.85 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2IUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IUB-query.scw
PDB file :
Tito_Scwrl_2IUB.pdb
: