Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEKQSALESKARSWLIERGVEIDDIAELVLF----LQQKYHP--GLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHDDIVN
4QFF Chain:A ((39-155))
-------------SWERQSAALLDAGARVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAVLVGFSMGT----GEVAR----------------------YVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKA----------------
General information:
TITO was launched using:
RESULT:
Template:
4QFF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37771 for 629 contacts (-60.0/contact) +
2D Compatibility (PS) -11604 + (NN) -522 + (LL) 4468
1D Compatibility (HY) -7600 + (ID) 1500
Total energy: -54529.0 ( -86.69 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_4QFF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QFF-query.scw
PDB file :
Tito_Scwrl_4QFF.pdb
: