Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHL-TDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
1YV9 Chain:A ((4-256))
--DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTF-
General information:
TITO was launched using:
RESULT:
Template:
1YV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138333 for 2196 contacts (-63.0/contact) +
2D Compatibility (PS) -27476 + (NN) -13549 + (LL) 160
1D Compatibility (HY) -27200 + (ID) 6600
Total energy: -212998.0 ( -96.99 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1YV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YV9-query.scw
PDB file :
Tito_Scwrl_1YV9.pdb
: