Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRRSAAPREEEQIEEETKEEPSYDYSKGWNNQGNPYTPPKSRKRRPEPTPENHERDEEEGGENSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTSTKIERDFIYHDTTLSILEFEIANGNIEFKPSDSNDIKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETLRFESKSKQIVTNLTVYLPRREYDYVSVK-MLNGNFHMDEL-SGRDLFVK-TTNGNISIGTLNATLAEIE-SINGNVRIQNGEIRDVALK-TFNGNVAVKGN-YYSTNLQ-TKNGNVNYQLTGNEATFLKAKTGAGNIDVVVPATIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSITFTKLPNAADSSLKIEAEATTGSVKIRDVK |
| 3LYC Chain:A ((132-250)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGT-VGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVN--KIKAEI-AGSGSVKYKGDPQ----------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -346 for 846 contacts (-0.4/contact) +
2D Compatibility (PS) -11280 + (NN) 2790 + (LL) 18788
1D Compatibility (HY) 4000 + (ID) 400
Total energy: 13552.0 ( 16.02 by residue)
QMean score : -0.002
|
|
|