Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYFQEARLIHVELPLIAPFKTSYGELNSKDFYIIELVNEEGIRGY--GELEAFPLPDYTEETLSTAISIVKQHLLPILAQKEIRTPQEINQMFSWIQGNEMAKAAVELAVWDAFAKNEKLSLAKMIGAEKDSIAVGVSIGLQPDAETLVRLVSQYMDEGYERVKLKIAPKKDIQFVKAVREKFPNLSLMADANSAYNREDFWLLKELDHFNLEMIEQPFGAKDFVDHAWLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVNLKLARVGGMSEALKIAKYCSDNNLLVWCGGMLEAGIGRAHNIALAARAEFTFPGDISASNRYFNKDIVSPAFVLNQGKLTVPTGQGIGVALDLDVLQKYTKSTERILLNKGWS |
2GGJ Chain:A ((10-371)) | --IEAAEIVVARLPLK----------THKVVPLL-ILHGEGVQGVAEGTMEARPM--YREETIAGALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGWDVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTCIEQPLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLATVTEAQE--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249003 for 3143 contacts (-79.2/contact) +
2D Compatibility (PS) -36803 + (NN) -13472 + (LL) 1208
1D Compatibility (HY) -26800 + (ID) 6900
Total energy: -331770.0 ( -105.56 by residue)
QMean score : 0.562
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