Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRDQVGFISSRIGLKREATPIFSDTNIFEIVVNIKPKPNCVLLDESQFLEKEHVFQLAKIVDELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAK-KATMVLRVDDKGKPVYTGEQIMIGGNDHYYPVCRKCHANPPIK
2QQ0 Chain:A ((10-177))
--------GPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-------TMIVSH----VEAHVIERPE---EMRKYIEEDTRGVFIDEVQFFNPS-LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG------GEEEIDVGGQEKYIAVCRDCY------
General information:
TITO was launched using:
RESULT:
Template:
2QQ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81816 for 1172 contacts (-69.8/contact) +
2D Compatibility (PS) -16829 + (NN) -5635 + (LL) 2216
1D Compatibility (HY) -11600 + (ID) 2650
Total energy: -116314.0 ( -99.24 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ0-query.scw
PDB file :
Tito_Scwrl_2QQ0.pdb
: