Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFMQKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEYCFRLLLVLLTIIQMSIIVYALGYDIPTGRFSLVTAGAFMFVVAAYIQYSKKLFKFLTMIGFKKIDAWSRNLLRKITTVTLNIAGTICFILALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK |
| 1KVZ Chain:A ((95-105)) | ----------------------------ELPVHFAGVGI--------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 145 for 23 contacts (6.3/contact) +
2D Compatibility (PS) -1086 + (NN) 188 + (LL) 18392
1D Compatibility (HY) -800 + (ID) 200
Total energy: 16639.0 ( 723.43 by residue)
QMean score : -0.317
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