Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFDNVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNIDG---EKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEH-ALELEEVTRFGQFAQLTYKNLEEN
1D1G Chain:A ((2-160))
----KVIFVLAMDVSGKIAS---SVESWSSFEDRKN--FRKITTEIGNVVMGRITFEEIGR-----PLPERLNVVLTRRPKTSNNPSLVFFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLK-----
General information:
TITO was launched using:
RESULT:
Template:
1D1G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107250 for 1106 contacts (-97.0/contact) +
2D Compatibility (PS) -16018 + (NN) 3134 + (LL) 732
1D Compatibility (HY) -16800 + (ID) 2150
Total energy: -138352.0 ( -125.09 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1D1G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1G-query.scw
PDB file :
Tito_Scwrl_1D1G.pdb
: