Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPSYAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSNILCLGERVIGEGLALLLVDTWLEASFAGDRHKRRLDKITELERK
2VVR Chain:A ((3-147))
-KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQR
General information:
TITO was launched using:
RESULT:
Template:
2VVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95753 for 1191 contacts (-80.4/contact) +
2D Compatibility (PS) -16009 + (NN) -9464 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -138968.0 ( -116.68 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_2VVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVR-query.scw
PDB file :
Tito_Scwrl_2VVR.pdb
: