Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFKGE---YKNPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESIIQREIAYIGSRSQK-PSSWILALDLLANGKIDTDKMITKVYGLDDWREAFEAVMAGNEIKVLVKS |
2DQ4 Chain:A ((1-339)) | MRALAKLAP-EEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHI-VCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVS-GKSVLITGAGPIGLMAAMVVRASGAGPILVS-DPNPYRLAFARPYA-DRLVNPLEEDLLEVVRRVTGS-GVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVIL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137002 for 2935 contacts (-46.7/contact) +
2D Compatibility (PS) -35515 + (NN) -10892 + (LL) 332
1D Compatibility (HY) -22000 + (ID) 5400
Total energy: -210477.0 ( -71.71 by residue)
QMean score : 0.437
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