Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAG---QTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
3T43 Chain:A ((3-133))
-------------------SQNDIIKALASPLINDGMVVSDFADHVITREQNAPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNF---EDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDADFMQQLLVMND-DEIYQSIYT---
General information:
TITO was launched using:
RESULT:
Template:
3T43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77211 for 944 contacts (-81.8/contact) +
2D Compatibility (PS) -13915 + (NN) -5628 + (LL) 3048
1D Compatibility (HY) -11600 + (ID) 2350
Total energy: -107656.0 ( -114.04 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3T43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T43-query.scw
PDB file :
Tito_Scwrl_3T43.pdb
: