Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEGGRHANRVGQITAYEDSHA
1NN4 Chain:A ((1-146))
--MKKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ---
General information:
TITO was launched using:
RESULT:
Template:
1NN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111363 for 1228 contacts (-90.7/contact) +
2D Compatibility (PS) -15664 + (NN) -5384 + (LL) 420
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -148691.0 ( -121.08 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1NN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NN4-query.scw
PDB file :
Tito_Scwrl_1NN4.pdb
: