Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTFIIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMPVESFHHF
4D3G Chain:A ((20-128))
MKMIIAIVQDQDSQELADQLVKNNFRATKLATT-------NTTFLCGVNDDRVDEILSVINQTCGNR-------------------------VGGATVFVMPVDAFHQF
General information:
TITO was launched using:
RESULT:
Template:
4D3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39975 for 502 contacts (-79.6/contact) +
2D Compatibility (PS) -8328 + (NN) -3515 + (LL) 1772
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -62896.0 ( -125.29 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_4D3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D3G-query.scw
PDB file :
Tito_Scwrl_4D3G.pdb
: