Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQGD-YPHARYMTFLHD--GLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPGSAFLEINGLASLE------EDESIKERI--WENISKEWFRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
4QVB Chain:A ((4-113))
--QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD-GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGE-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21633 for 597 contacts (-36.2/contact) +
2D Compatibility (PS) -11026 + (NN) -4868 + (LL) 1800
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -42277.0 ( -70.82 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_4QVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVB-query.scw
PDB file :
Tito_Scwrl_4QVB.pdb
: