Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGS--PEDFPVSLALLGKIQVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISHTGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
2YWC Chain:A ((2-211))
-VLVLDFGSQYTRLIARRLRELRA-FSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGP-LFRGLEGEVQVWMSHQDAV--TAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLEL-----
General information:
TITO was launched using:
RESULT:
Template:
2YWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150914 for 1558 contacts (-96.9/contact) +
2D Compatibility (PS) -18673 + (NN) -4514 + (LL) 12
1D Compatibility (HY) -6400 + (ID) 2750
Total energy: -183239.0 ( -117.61 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_2YWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWC-query.scw
PDB file :
Tito_Scwrl_2YWC.pdb
: