Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNH-MDKDVFRRDLGSLTDVYQVVLEKLIAL
3U55 Chain:A ((12-231))
----------AKKMIPIDDDKLIME-FKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLD-EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGE
General information:
TITO was launched using:
RESULT:
Template:
3U55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65161 for 1679 contacts (-38.8/contact) +
2D Compatibility (PS) -23482 + (NN) -4247 + (LL) 880
1D Compatibility (HY) -22000 + (ID) 5300
Total energy: -119310.0 ( -71.06 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3U55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U55-query.scw
PDB file :
Tito_Scwrl_3U55.pdb
: