Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQI--KNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQAGIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
3IGS Chain:A ((8-227))
------EQLDKNIAASGGLIVSCQPVPGSPL--DKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQR--PVAVEALLARIHHHH--LLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEE-PDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICGWYNDALK
General information:
TITO was launched using:
RESULT:
Template:
3IGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125268 for 1891 contacts (-66.2/contact) +
2D Compatibility (PS) -23353 + (NN) -11796 + (LL) 228
1D Compatibility (HY) -16000 + (ID) 4250
Total energy: -180439.0 ( -95.42 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3IGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IGS-query.scw
PDB file :
Tito_Scwrl_3IGS.pdb
: