Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLTEGSIDGIAISSAGMVDPDEGCIFYSGPQIPNYAGTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGSAKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHL----------SDGDFQDLASTTALI-------------ADVAKAHGD-EISRWDGRRIFQEAKEGNEKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQKDYLQDKLSESLKRNLVTSLAEKTAIVF-AQHENQAGMLGAYYHFKNRG |
3VGK Chain:A ((3-306)) | --LTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTA--EGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFA-PNI-DWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195839 for 2419 contacts (-81.0/contact) +
2D Compatibility (PS) -29347 + (NN) -7380 + (LL) -304
1D Compatibility (HY) -18000 + (ID) 4000
Total energy: -254870.0 ( -105.36 by residue)
QMean score : 0.414
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