Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNMMKYISELTTLIALAGLMVIITLINPNFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSILALSSALTAGLIGHGVPVGIAIVLSVALGGILGMLNGLFISYGKLAPFIVTLATMTIFRGATL----------VYSNGNPITAGLSDSFLFQF----LGQGYIVGIPFPVILMFLTFIILYILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIIIYTISGIMASISGLIITSRLSSAQPTAGASYEMDAIAAVVLGGTSLSGGKGRIIGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILMAVLLDRFKVAK |
| 3A9V Chain:A ((235-345)) | ---------------------------------------------------------------------IYALNSIMLCGLRV-GAP--ILIMPKFEIGSLLGLIEKYKVSIAPVVPPVM----MSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A9V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77361 for 606 contacts (-127.7/contact) +
2D Compatibility (PS) -9921 + (NN) 164 + (LL) 6288
1D Compatibility (HY) -9600 + (ID) 1700
Total energy: -92130.0 ( -152.03 by residue)
QMean score : 0.056
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