Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKLRRFRFPLRFYFTLMFVLTMLFSVLASLLLVAAIVFTFFQGVLTTHVLQVSALAVVFLSLVIASISMWYGSYHLTKPILDISRIVSNVADGDFEGHIYRNSNRRKSYEYYNELDELSESINQMIVSLSHMDHMRKDFITNVSHELKTPIAAVANIVELLQDP--ELDEETQSELLGLVKTESLRLTRLCDTMLQMSRVDNQETIGELSSVRVDEQIRQAMISLTERWQAKRINFQLDSK---PYTVYSNSDLLMQVWINLLDNAIKYS-DDIVD--LRVRMEETNNHYLRVIISDKGRGISQYDVQHIFDKFYQADQS--HNQQGNGLGLAIVKRIIVLCKGRISVSSQFEIGTEFCVELPLS |
4JAV Chain:A ((13-246)) | ---------------------------------------------------------------------------------------------------------------------------------LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVL-IIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123074 for 1564 contacts (-78.7/contact) +
2D Compatibility (PS) -24062 + (NN) -10506 + (LL) 12204
1D Compatibility (HY) -19600 + (ID) 3850
Total energy: -168888.0 ( -107.98 by residue)
QMean score : 0.507
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