Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVCYFTGRKTVSGNN---RSHAMNQ----------TKRTVKPNLQKVTVLIDGKPKKVWVSARALKSGKVERV
2ZJP Chain:U ((8-69))
-------TGKKNLVVNSVIRRGKARADGGVGRKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRTLSKGPY
General information:
TITO was launched using:
RESULT:
Template:
2ZJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10839 for 226 contacts (48.0/contact) +
2D Compatibility (PS) -4913 + (NN) 4398 + (LL) 888
1D Compatibility (HY) -800 + (ID) 1000
Total energy: 9412.0 ( 41.65 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJP-query.scw
PDB file :
Tito_Scwrl_2ZJP.pdb
: