Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLEIKNLHVSIEDK---EILKGLNLTLKTGEIAAIMGPNGTGKSTLSAAIMGNPNYEVTAGEILFDGEDILELEVDERARLGLFLAMQYPSEVPGITNAEFIRAAMNAGKADDDKI-------SIRQFITKLDEKMELLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKVVSKGVNEMRGEGFGAMIITHYQRLLNYITPDKVHVMMDGKVVLSGGPELAVRLEKEGYAQIAEELGLEYKEEV
4F4C Chain:A ((1079-1306))
-----FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLN-PEHTRSQIAIVSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE-----GFETRVGDR--GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAH--RLNTVMNADCIAVVSNGTII-----------EKGTHTQLMSEK--------
General information:
TITO was launched using:
RESULT:
Template:
4F4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71495 for 1633 contacts (-43.8/contact) +
2D Compatibility (PS) -23051 + (NN) -2803 + (LL) 3240
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -111759.0 ( -68.44 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_4F4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4C-query.scw
PDB file :
Tito_Scwrl_4F4C.pdb
: