Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEISLLTDIGQRRSNNQD--FINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSE-----IRDWMLVSIETENRKIYELGQSDDYKG-MGTTIEAVAIV----GDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNIITQSIGQANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALVYVESEAV
2Y09 Chain:A ((1-240))
MDVAGLTDCGLIRKSNQDAFYIDEKHQR----FFIVADGMGGHAGGEEASRLAV-DHIRQYLETHLEDLQHDPVTLLRQAFLAA----NHAIVEQQRQNSARADMGTT--AVVILLDEKGDRAWCAHVGASRIYRWRKDQLQQITSDHTWIAQAVQLGSL----ARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTD-DVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV-----
General information:
TITO was launched using:
RESULT:
Template:
2Y09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82246 for 1930 contacts (-42.6/contact) +
2D Compatibility (PS) -23927 + (NN) -10304 + (LL) 1872
1D Compatibility (HY) -14800 + (ID) 4100
Total energy: -133505.0 ( -69.17 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2Y09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y09-query.scw
PDB file :
Tito_Scwrl_2Y09.pdb
: