Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIENTLMTKNCICLIAKLKNKVIGLITIISQSDIE-IEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
1YR0 Chain:A ((4-159))
-----SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLE-NRKDWFAART--SRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDV-HVLIAAIEAENTASIRLHESLGFRVVGRFSE-VGTKFGRWLDLTCMELKL-
General information:
TITO was launched using:
RESULT:
Template:
1YR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101754 for 1087 contacts (-93.6/contact) +
2D Compatibility (PS) -16617 + (NN) -3440 + (LL) 1028
1D Compatibility (HY) -7600 + (ID) 2050
Total energy: -130433.0 ( -119.99 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1YR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YR0-query.scw
PDB file :
Tito_Scwrl_1YR0.pdb
: