Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKYYIVIGYLISMLITVAGVFFGLNHMLIETRGVYYILSVTIIACIVGGIVNLFLLSSVFTSLKKLKQKMKDISQRCFDTKAQICSPQEFKDLETAFNQMSSELESTFKSLNESEREKTMMIAQLSHDIKTPITSIQSTVEGILDGIISEEEVNYYLNTISRQTNRLNHLVEELSFITLETMSDTAEPHKEETIYLDKLLIDILSEFQLVFEKENRQVMIDVAPDVSKLSSQYDKLSRILLNLISNAVKYSDPGSPLTIKAYSNRQDIVIDIIDQGYGIKDEDLASIFNRLYRVESSRNMKTGGHGLGLYIARQLAHQLNGDILVESQYQKGSKFSLVLKLQK |
| 4BIY Chain:A ((61-296)) | ---------------------------------------------------------------------------------------------AAGASFNQVVTALERMMTS-------QQRLLSDISHELRTPLTRLQLGT-ALLRRRSGESK---ELERIETEAQRLDSMINDLLVMSRNQQKNAL---VSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSH--TKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTD---------TGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BIY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93986 for 1604 contacts (-58.6/contact) +
2D Compatibility (PS) -23610 + (NN) -1100 + (LL) 9120
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -122026.0 ( -76.08 by residue)
QMean score : 0.353
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